ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ernD1 - ECOD Domain | ECOD

ECOD/Domains/e3ernD1

e3ernD1

UID: 000370496

PDB

Range: D:1-156
PDB: 3ERN chain D(all domains)
UniProt: P62617 (all domains)
Gene: ispF

Molecule: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

3D Structure

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Related Domains

Browse other domains in YgbB →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5)

TT-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5.1)

FFamilyYgbB(301.5.1.1)

Ligands

in contact, ≤ 4 Å

Aracytidine 5'-monophosphateCAR
drugDrugBank DB02456
Geranyl DiphosphateGPP
drugDrugBank DB02552

Pfam Families

YgbB family

External Links

ECOD PDB View: 3ERN RCSB PDB: 3ERN PDBe: 3ERN UniProt: P62617

Downloads

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Zinc ion

metal

Shown in the structure viewer. Drug annotations from DrugDomain.