ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ekpA1 - ECOD Domain | ECOD

ECOD/Domains/e3ekpA1

e3ekpA1

UID: 000371101

PDB

Range: A:1-99
PDB: 3EKP chain A(all domains)
UniProt: P03369 (all domains)
Gene: gag-pol

Molecule: Protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

Amprenavir478
drugDrugBank DB00701

+ 2 additives (Acetate, Phosphate ion)

AcetateACT
DrugBank DB14511

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 3EKP RCSB PDB: 3EKP PDBe: 3EKP UniProt: P03369

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Phosphate ionPO4

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.