ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1knyA1 - ECOD Domain | ECOD

ECOD/Domains/e1knyA1

e1knyA1

UID: 000003733

RepresentativePDB

Range: A:126-253
PDB: 1KNY chain A(all domains)
UniProt: P05057 (all domains)
Gene: knt

Molecule: KANAMYCIN NUCLEOTIDYLTRANSFERASE

3D Structure

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Related Domains

Browse other domains in KNTase_C →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFour-helical up-and-down bundle(601)

HH-groupHEPN(601.7)

TT-groupNucleotidyltransferase substrate binding subunit/domain(601.7.1)

FFamilyKNTase_C(601.7.1.5)

Ligands

in contact, ≤ 4 Å

alpha,beta-Methyleneadenosine 5'-triphosphateAPC
drugDrugBank DB02596
KanamycinKAN
drugDrugBank DB01172

Shown in the structure viewer.

Pfam Families

PF07827KNTase_C

KNTase C-terminal domain

ClanCL0291KNTase_C

External Links

ECOD PDB View: 1KNY RCSB PDB: 1KNY PDBe: 1KNY UniProt: P05057

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.