ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3fkbD1 - ECOD Domain | ECOD

ECOD/Domains/e3fkbD1

e3fkbD1

UID: 000373542

PDB

Range: D:7-155
PDB: 3FKB chain D(all domains)
UniProt: P22887 (all domains)
Gene: ndkC-1

Molecule: Nucleoside diphosphate kinase, cytosolic

3D Structure

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Related Domains

Browse other domains in NDK →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupNucleoside diphosphate kinases(304.34)

TT-groupNucleoside diphosphate kinases(304.34.1)

FFamilyNDK(304.34.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
[(2R)-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-phosphonooxy-phosphinic acidTNM
[2-(6-AMINO-9H-PURIN-9-YL)-1-METHYLETHOXY]METHYL-TRIPHOSPHATETNV

Pfam Families

Nucleoside diphosphate kinase

External Links

ECOD PDB View: 3FKB RCSB PDB: 3FKB PDBe: 3FKB UniProt: P22887

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (Glycerin, 1,2-ETHANEDIOL)

GlycerinGOL
DrugBank DB09462
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.