ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3jvhC1 - ECOD Domain | ECOD

ECOD/Domains/e3jvhC1

e3jvhC1

UID: 000373940

PDB

Range: C:1-159
PDB: 3JVH chain C(all domains)
UniProt: Q3JRA0 (all domains)
Gene: ispF

Molecule: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

3D Structure

Loading viewer...

Related Domains

Browse other domains in YgbB →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5)

TT-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5.1)

FFamilyYgbB(301.5.1.1)

Ligands

in contact, ≤ 4 Å

5-[(pyridin-3-ylmethyl)amino]-1H-pyrazole-4-carboxamideHHV
Zinc ionZN
metal

+ 1 additive (Glycerin)

GlycerinGOL

Pfam Families

YgbB family

External Links

ECOD PDB View: 3JVH RCSB PDB: 3JVH PDBe: 3JVH UniProt: Q3JRA0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.