ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3it9B3 - ECOD Domain | ECOD

ECOD/Domains/e3it9B3

e3it9B3

UID: 000375197

PDB

Range: B:8-36,B:156-258
PDB: 3IT9 chain B(all domains)
UniProt: P08506 (all domains)
Gene: dacC

Molecule: D-alanyl-D-alanine carboxypeptidase dacC

3D Structure

Loading viewer...

Related Domains

Browse other domains in Peptidase_S11 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyPeptidase_S11(223.3.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00768Peptidase_S11

D-alanyl-D-alanine carboxypeptidase

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 3IT9 RCSB PDB: 3IT9 PDBe: 3IT9 UniProt: P08506

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure