ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3keuA1 - ECOD Domain | ECOD

ECOD/Domains/e3keuA1

e3keuA1

UID: 000376523

PDB

Range: A:3-312
PDB: 3KEU chain A(all domains)
UniProt: O00764 (all domains)
Gene: PDXK

Molecule: Pyridoxal kinase

3D Structure

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Related Domains

Browse other domains in Phos_pyr_kin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRibokinase-like(2003.6)

TT-groupRibokinase-like(2003.6.1)

FFamilyPhos_pyr_kin(2003.6.1.5)

Ligands

in contact, ≤ 4 Å

ATPATP
drugDrugBank DB00171
Pyridoxal phosphatePLP
drugDrugBank DB00114
Magnesium ion

Pfam Families

PF08543Phos_pyr_kin

Phosphomethylpyrimidine kinase

ClanCL0118Ribokinase

External Links

ECOD PDB View: 3KEU RCSB PDB: 3KEU PDBe: 3KEU UniProt: O00764

Downloads

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metal

Sodium ionNA

metal

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Sulfate ion)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.