ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3gmpA2 - ECOD Domain | ECOD

ECOD/Domains/e3gmpA2

e3gmpA2

UID: 000376751

PDB

Range: A:7-182
PDB: 3GMP chain A(all domains)
UniProt: P11609 (all domains)
Gene: Cd1d1

Molecule: T-cell surface glycoprotein CD1d1

3D Structure

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Related Domains

Browse other domains in MHC_I_3 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupMHC antigen-recognition domain(233)

HH-groupMHC antigen-recognition domain(233.1)

TT-groupMHC antigen-recognition domain(233.1.1)

FFamilyMHC_I_3(233.1.1.6)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Palmitic AcidPLM
drugDrugBank DB03796

Pfam Families

PF16497MHC_I_3

MHC-I family domain

ClanCL0343MHC

External Links

ECOD PDB View: 3GMP RCSB PDB: 3GMP PDBe: 3GMP UniProt: P11609

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(2S,3S,4R)-N-OCTANOYL-1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]-2-AMINO-OCTADECANE-3,4-DIOL

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.