ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3jxeB1 - ECOD Domain | ECOD

ECOD/Domains/e3jxeB1

e3jxeB1

UID: 000376964

PDB

Range: B:1-381
PDB: 3JXE chain B(all domains)
UniProt: O59584 (all domains)
Gene: trpS

Molecule: Tryptophanyl-tRNA synthetase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_1b →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilytRNA-synt_1b(2005.1.1.2)

Ligands

in contact, ≤ 4 Å

Tryptophanyl-5'ampTYM
drugDrugBank DB01831

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF00579tRNA-synt_1b

tRNA synthetases class I (W and Y)

ClanCL0039HUP

External Links

ECOD PDB View: 3JXE RCSB PDB: 3JXE PDBe: 3JXE UniProt: O59584

Downloads

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Drug annotations from DrugDomain.