ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3hptD1 - ECOD Domain | ECOD

ECOD/Domains/e3hptD1

e3hptD1

UID: 000377250

PDB

Range: D:16-248
PDB: 3HPT chain D(all domains)
UniProt: P00742 (all domains)
Gene: F10

Molecule: Coagulation factor X

3D Structure

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Related Domains

Browse other domains in Trypsin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel 2(1.1.17)

FFamilyTrypsin(1.1.17.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Sodium ionNA
metal
1-cyano-2-(2-methyl-1-benzofuran-5-yl)-3-[(3S)-2-oxo-1-(2-oxo-2-pyrrolidin-1-ylethyl)azepan-3-yl]guanidineYET

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 3HPT RCSB PDB: 3HPT PDBe: 3HPT UniProt: P00742

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 4 additives (Acetate, Dimethyl sulfoxide, Glycerin, …)

AcetateACT
DrugBank DB14511
Dimethyl sulfoxideDMS
DrugBank DB01093
GlycerinGOL
DrugBank DB09462
2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Shown in the structure viewer. Drug annotations from DrugDomain.