ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q94KD3_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q94KD3_F1_nD2

Q94KD3_F1_nD2

UID: 003805130

AlphaFold

Range: 136-310,336-700
AlphaFold: AF-Q94KD3
UniProt: Q94KD3 (all domains)
Gene: VPS52

Protein: Vacuolar protein sorting-associated protein 52 A (AtVPS52) (ARE1-like protein POK) (Protein POKY POLLEN TUBE) (Protein T-DNA TRANSMISSION DEFECT 8)

3D Structure

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Related Domains

Browse other domains in Vps52_CC, Vps52_C →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyVps52_CC, Vps52_C(109.4.1.1307)

Pfam Families

PF04129Vps52_CC

Vps52/Sac2 family, coiled-coil

ClanCL0020TPR

PF20655Vps52_C

Vps52, C-terminal

ClanCL0020TPR

External Links

AlphaFold DB: Q94KD3 UniProt: Q94KD3

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 136-310,336-700