ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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F4KHG8_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/F4KHG8_F1_nD1

F4KHG8_F1_nD1

UID: 003826106

AlphaFold

Range: 11-600,876-900
AlphaFold: AF-F4KHG8
UniProt: F4KHG8 (all domains)
Gene: PRP39-2

Protein: Pre-mRNA-processing factor 39-2 (AtPRP39-2) (PRP39 homolog B) (Pre-mRNA-processing factor 39b)

3D Structure

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Related Domains

Browse other domains in HAT_PRP39_N, HAT_PRP39_C →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyHAT_PRP39_N, HAT_PRP39_C(109.4.1.1303)

Pfam Families

PF23240HAT_PRP39_N

PRP39 N-terminal HAT repeat

ClanCL0020TPR

PF23241HAT_PRP39_C

PRP39 C-terminal HAT repeat

ClanCL0020TPR

External Links

AlphaFold DB: F4KHG8 UniProt: F4KHG8

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 11-600,876-900