ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2wvgB3 - ECOD Domain | ECOD

ECOD/Domains/e2wvgB3

e2wvgB3

UID: 000383629

PDB

Range: B:363-566
PDB: 2WVG chain B(all domains)
UniProt: P06672 (all domains)
Gene: pdc

Molecule: PYRUVATE DECARBOXYLASE

3D Structure

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Related Domains

Browse other domains in TPP_enzyme_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyTPP_enzyme_C(7574.1.1.5)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
2-{1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-5-METHYL-1H-1,2,3-TRIAZOL-4-YL}ETHYL TRIHYDROGEN DIPHOSPHATETPU
Fluoride ionF

Pfam Families

PF02775TPP_enzyme_C

Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

ClanCL0254THDP-binding

External Links

ECOD PDB View: 2WVG RCSB PDB: 2WVG PDBe: 2WVG UniProt: P06672

Downloads

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within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.