ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3kfnA1 - ECOD Domain | ECOD

ECOD/Domains/e3kfnA1

e3kfnA1

UID: 000384665

PDB

Range: A:1-99
PDB: 3KFN chain A(all domains)
UniProt: P12499 (all domains)
Gene: gag-pol

Molecule: Protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate3TL
(1S,2S)-2-methylcyclohexanol4DX
Potassium ionK

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 3KFN RCSB PDB: 3KFN PDBe: 3KFN UniProt: P12499

Downloads

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metal

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS
DrugBank DB01093

Shown in the structure viewer. Drug annotations from DrugDomain.