ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ktmB1 - ECOD Domain | ECOD

ECOD/Domains/e3ktmB1

e3ktmB1

UID: 000384786

PDB

Range: B:124-190
PDB: 3KTM chain B(all domains)
UniProt: P05067 (all domains)
Gene: APP

Molecule: Amyloid beta A4 protein

3D Structure

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Related Domains

Browse other domains in APP_Cu_bd →

Classification

AArchitecturea+b two layers(a.11)

XX-groupDodecin subunit-like(872)

HH-groupAmyloid beta a4 protein copper binding domain (domain 2)(872.2)

TT-groupAmyloid beta a4 protein copper binding domain (domain 2)(872.2.1)

FFamilyAPP_Cu_bd(872.2.1.1)

Ligands

in contact, ≤ 4 Å

(3R)-butane-1,3-diolBU4

+ 2 additives (Acetate, Sulfate ion)

AcetateACT
DrugBank DB14511
Sulfate ionSO4

Pfam Families

PF12924APP_Cu_bd

Copper-binding of amyloid precursor, CuBD

External Links

ECOD PDB View: 3KTM RCSB PDB: 3KTM PDBe: 3KTM UniProt: P05067

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.