ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3lo2A1 - ECOD Domain | ECOD

ECOD/Domains/e3lo2A1

e3lo2A1

UID: 000386353

PDB

Range: A:1-30
PDB: 3LO2 chain A(all domains)
UniProt: P59665 (all domains)
Gene: DEFA1

Molecule: Neutrophil defensin 1

3D Structure

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Related Domains

Browse other domains in Defensin_1 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupDefensin-like(383)

HH-groupDefensin-related(383.1)

TT-groupDefensin-related(383.1.1)

FFamilyDefensin_1(383.1.1.1)

Ligands

in contact, ≤ 4 Å

trifluoroacetic acidTFA

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00323Defensin_1

Mammalian defensin

ClanCL0075Defensin

External Links

ECOD PDB View: 3LO2 RCSB PDB: 3LO2 PDBe: 3LO2 UniProt: P59665

Downloads

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