ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2x1wB1 - ECOD Domain | ECOD

ECOD/Domains/e2x1wB1

e2x1wB1

UID: 000386462

PDB

Range: B:117-214
PDB: 2X1W chain B(all domains)
UniProt: P49767 (all domains)
Gene: VEGFC

Molecule: VASCULAR ENDOTHELIAL GROWTH FACTOR C

3D Structure

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Related Domains

Browse other domains in PDGF →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupCystine-knot cytokines(385)

HH-groupCystine-knot cytokines(385.1)

TT-groupCystine-knot cytokines(385.1.1)

FFamilyPDGF(385.1.1.5)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only
Cesium ionCS
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PDGF/VEGF domain

ClanCL0079Cystine-knot

External Links

ECOD PDB View: 2X1W RCSB PDB: 2X1W PDBe: 2X1W UniProt: P49767

Downloads

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