ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3lm8C1 - ECOD Domain | ECOD

ECOD/Domains/e3lm8C1

e3lm8C1

UID: 000387243

PDB

Range: C:133-214
PDB: 3LM8 chain C(all domains)
UniProt: O34664 (all domains)
Gene: thiN

Molecule: Thiamine pyrophosphokinase

3D Structure

Loading viewer...

Related Domains

Browse other domains in TPK_B1_binding →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupThiamin pyrophosphokinase, substrate-binding domain(10.11)

TT-groupThiamin pyrophosphokinase, substrate-binding domain(10.11.1)

FFamilyTPK_B1_binding(10.11.1.1)

Ligands

in contact, ≤ 4 Å

ThiamineVIB
drugDrugBank DB00152

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

PF04265TPK_B1_binding

Thiamin pyrophosphokinase, vitamin B1 binding domain

External Links

ECOD PDB View: 3LM8 RCSB PDB: 3LM8 PDBe: 3LM8 UniProt: O34664

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.