ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3kgdB1 - ECOD Domain | ECOD

ECOD/Domains/e3kgdB1

e3kgdB1

UID: 000389110

PDB

Range: B:2-184,B:280-339
PDB: 3KGD chain B(all domains)
UniProt: P46849 (all domains)
Gene: rtcA

Molecule: RNA 3'-terminal phosphate cyclase

3D Structure

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Related Domains

Browse other domains in RTC →

Classification

AArchitecturea+b two layers(a.11)

XX-groupIF3-like(328)

HH-groupEPT/RTPC-like(328.6)

TT-groupEPT/RTPC-like(328.6.1)

FFamilyRTC(328.6.1.2)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131
Sodium ionNA
metal

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL

Pfam Families

RNA 3'-terminal phosphate cyclase

ClanCL0290EPT_RTPC

External Links

ECOD PDB View: 3KGD RCSB PDB: 3KGD PDBe: 3KGD UniProt: P46849

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.