ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ag2S1 - ECOD Domain | ECOD

ECOD/Domains/e3ag2S1

e3ag2S1

UID: 000389512

PDB

Range: S:1-98
PDB: 3AG2 chain S(all domains)
UniProt: P00428 (all domains)
Gene: COX5B

Molecule: Cytochrome c oxidase subunit 5B, mitochondrial

3D Structure

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Related Domains

Browse other domains in COX5B →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupCytochrome c oxidase Subunit F(375.1.8)

FFamilyCOX5B(375.1.8.1)

Ligands

in contact, ≤ 4 Å

Cholic AcidCHD
drugDrugBank DB02659within 5 Å only
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATEPEK
Zinc ion

Pfam Families

Cytochrome c oxidase subunit Vb

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 3AG2 RCSB PDB: 3AG2 PDBe: 3AG2 UniProt: P00428

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEPGV

within 5 Å only

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.