ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3kicJ1 - ECOD Domain | ECOD

ECOD/Domains/e3kicJ1

e3kicJ1

UID: 000389683

PDB

Range: J:217-736
PDB: 3KIC chain J(all domains)
UniProt: O56139 (all domains)

Molecule: Capsid protein VP1

3D Structure

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Related Domains

Browse other domains in Parvo_coat →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyParvo_coat(10.2.1.9)

Ligands

in contact, ≤ 4 Å

2'-DEOXYADENOSINE-5'-MONOPHOSPHATED5M

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Parvovirus coat protein VP1/VP2

ClanCL0605ssDNA_NP_VP

External Links

ECOD PDB View: 3KIC RCSB PDB: 3KIC PDBe: 3KIC UniProt: O56139

Downloads

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