ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3kieC1 - ECOD Domain | ECOD

ECOD/Domains/e3kieC1

e3kieC1

UID: 000389696

PDB

Range: C:217-736
PDB: 3KIE chain C(all domains)
UniProt: O56139 (all domains)

Molecule: Capsid protein VP1

3D Structure

Loading viewer...

Related Domains

Browse other domains in Parvo_coat →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyParvo_coat(10.2.1.9)

Ligands

in contact, ≤ 4 Å

2'-DEOXYADENOSINE-5'-MONOPHOSPHATED5M

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Parvovirus coat protein VP1/VP2

ClanCL0605ssDNA_NP_VP

External Links

ECOD PDB View: 3KIE RCSB PDB: 3KIE PDBe: 3KIE UniProt: O56139

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure