ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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R4GER2_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/R4GER2_F1_nD1

R4GER2_F1_nD1

UID: 003907402

AlphaFold

Range: 46-155,221-440
AlphaFold: AF-R4GER2
UniProt: R4GER2 (all domains)
Gene: atg4da

Protein: Cysteine protease atg4da (EC 3.4.22.-) (Autophagy-related protein 4 homolog D-A)

3D Structure

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Related Domains

Browse other domains in Peptidase_C54 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyPeptidase_C54(219.1.1.19)

Pfam Families

PF03416Peptidase_C54

Peptidase C54 catalytic domain

ClanCL0125Peptidase_CA

External Links

AlphaFold DB: R4GER2 UniProt: R4GER2

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 46-155,221-440