ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q66ID3_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q66ID3_F1_nD3

Q66ID3_F1_nD3

UID: 003917272

AlphaFold

Range: 71-180,266-380
AlphaFold: AF-Q66ID3
UniProt: Q66ID3 (all domains)
Gene: spout1

Protein: 28S rRNA (uridine-N(3))-methyltransferase (EC 2.1.1.-) (Centromere protein 32) (CENP-32) (Kinetochore-associated protein) (SPOUT domain-containing methyltransferase 1)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Methyltrn_RNA_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyMethyltrn_RNA_3(2488.1.1.6)

Pfam Families

PF02598Methyltrn_RNA_3

Putative RNA methyltransferase

ClanCL0098SPOUT

External Links

AlphaFold DB: Q66ID3 UniProt: Q66ID3

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 71-180,266-380