ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3k4vC1 - ECOD Domain | ECOD

ECOD/Domains/e3k4vC1

e3k4vC1

UID: 000392731

PDB

Range: C:1-99
PDB: 3K4V chain C(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: HIV-1 Protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

SaquinavirROC
drugDrugBank DB01232

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS
DrugBank DB01093

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 3K4V RCSB PDB: 3K4V PDBe: 3K4V UniProt: P03366

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.