ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3mz6A1 - ECOD Domain | ECOD

ECOD/Domains/e3mz6A1

e3mz6A1

UID: 000394256

PDB

Range: A:14-377
PDB: 3MZ6 chain A(all domains)
UniProt: Q9BY41 (all domains)
Gene: HDAC8

Molecule: Histone deacetylase 8

3D Structure

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Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Ligands

in contact, ≤ 4 Å

4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamideB3N
drugDrugBank DB02565
FE (II) IONFE2
metal
Potassium ion

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

ECOD PDB View: 3MZ6 RCSB PDB: 3MZ6 PDBe: 3MZ6 UniProt: Q9BY41

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

K

metal

Shown in the structure viewer. Drug annotations from DrugDomain.