ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3mf2A1 - ECOD Domain | ECOD

ECOD/Domains/e3mf2A1

e3mf2A1

UID: 000396330

PDB

Range: A:17-315
PDB: 3MF2 chain A(all domains)
UniProt: Q89VT8 (all domains)
Gene: bll0957

Molecule: Bll0957 protein

3D Structure

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Related Domains

Browse other domains in tRNA-synt_2b →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_2b(314.1.1.2)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131
Zinc ionZN
metal

+ 1 additive (Glycerin)

Pfam Families

PF00587tRNA-synt_2b

tRNA synthetase class II core domain (G, H, P, S and T)

ClanCL0040tRNA_synt_II

External Links

ECOD PDB View: 3MF2 RCSB PDB: 3MF2 PDBe: 3MF2 UniProt: Q89VT8

Downloads

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GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.