ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3myrE1 - ECOD Domain | ECOD

ECOD/Domains/e3myrE1

e3myrE1

UID: 000396891

PDB

Range: E:183-270
PDB: 3MYR chain E(all domains)
UniProt: D3RV29 (all domains)
Gene: Alvin_2039

Molecule: Hydrogenase (NiFe) small subunit HydA

3D Structure

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Related Domains

Browse other domains in NiFe_hyd_SSU_C →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupFe-S cluster-binding domain in nickel-iron hydrogenase small subunit(4024)

HH-groupFe-S cluster-binding domain in nickel-iron hydrogenase small subunit(4024.1)

TT-groupFe-S cluster-binding domain in nickel-iron hydrogenase small subunit(4024.1.1)

FFamilyNiFe_hyd_SSU_C(4024.1.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
FE3-S4 CLUSTERF3S
Iron/sulfur clusterSF4

Shown in the structure viewer.

Pfam Families

PF14720NiFe_hyd_SSU_C

NiFe/NiFeSe hydrogenase small subunit C-terminal

External Links

ECOD PDB View: 3MYR RCSB PDB: 3MYR PDBe: 3MYR UniProt: D3RV29

Downloads

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Drug annotations from DrugDomain.