ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3myrD4 - ECOD Domain | ECOD

ECOD/Domains/e3myrD4

e3myrD4

UID: 000396902

PDB

Range: D:1038-1080,D:1474-1519
PDB: 3MYR chain D(all domains)
UniProt: D3RV26 (all domains)
Gene: Alvin_2036

Molecule: Nickel-dependent hydrogenase large subunit

3D Structure

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Related Domains

Browse other domains in NiFeSe_Hases →

Classification

AArchitecturea+b two layers(a.11)

XX-groupFAD-linked reductases, C-terminal domain-like(244)

HH-groupNi-Fe binding domain in nickel-iron hydrogenase large subunit(244.4)

TT-groupNi-Fe binding domain in nickel-iron hydrogenase large subunit(244.4.1)

FFamilyNiFeSe_Hases(244.4.1.2)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
Ni-fe oxidized active centerNFV
Iron/sulfur clusterSF4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00374NiFeSe_Hases

Nickel-dependent hydrogenase

External Links

ECOD PDB View: 3MYR RCSB PDB: 3MYR PDBe: 3MYR UniProt: D3RV26

Downloads

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