ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q8ZRB7_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q8ZRB7_F1_nD2

Q8ZRB7_F1_nD2

UID: 003980293

AlphaFold

Range: 136-265
AlphaFold: AF-Q8ZRB7
UniProt: Q8ZRB7 (all domains)
Gene: ybaE

Protein: ABC transporter periplasmic binding protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupOligo-peptide binding protein (OPPA) insertion domain(304.136)

TT-groupOligo-peptide binding protein (OPPA) insertion domain(304.136.1)

FFamilySBP_bac_5(304.136.1.1)

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

AlphaFold DB: Q8ZRB7 UniProt: Q8ZRB7

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 136-265