ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q8DPC5_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q8DPC5_F1_nD1

Q8DPC5_F1_nD1

UID: 003987372

AlphaFold

Range: 26-140,261-320
AlphaFold: AF-Q8DPC5
UniProt: Q8DPC5 (all domains)
Gene: potD

Protein: ABC transporter substrate-binding protein-spermidine/putrescine transport

3D Structure

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Related Domains

Browse other domains in SBP_bac_8 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_8(7523.1.1.28)

Pfam Families

PF13416SBP_bac_8

Bacterial extracellular solute-binding protein

ClanCL0177PBP

External Links

AlphaFold DB: Q8DPC5 UniProt: Q8DPC5

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 26-140,261-320