ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3kdnD1 - ECOD Domain | ECOD

ECOD/Domains/e3kdnD1

e3kdnD1

UID: 000401964

PDB

Range: D:8-136
PDB: 3KDN chain D(all domains)
UniProt: O93627 (all domains)
Gene: rbcL

Molecule: Ribulose bisphosphate carboxylase

3D Structure

Loading viewer...

Related Domains

Browse other domains in RuBisCO_large_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRuBisCO, large subunit, small (N-terminal) domain(304.10)

TT-groupRuBisCO, large subunit, small (N-terminal) domain(304.10.1)

FFamilyRuBisCO_large_N(304.10.1.1)

Ligands

in contact, ≤ 4 Å

2-CARBOXYARABINITOL-1,5-DIPHOSPHATECAP
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02788RuBisCO_large_N

Ribulose bisphosphate carboxylase large chain, N-terminal domain

External Links

ECOD PDB View: 3KDN RCSB PDB: 3KDN PDBe: 3KDN UniProt: O93627

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure