ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3kdoC2 - ECOD Domain | ECOD

ECOD/Domains/e3kdoC2

e3kdoC2

UID: 000401983

PDB

Range: C:137-444
PDB: 3KDO chain C(all domains)
UniProt: O93627 (all domains)
Gene: rbcL

Molecule: Ribulose bisphosphate carboxylase

3D Structure

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Related Domains

Browse other domains in RuBisCO_large →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyRuBisCO_large(2002.1.1.1)

Ligands

in contact, ≤ 4 Å

2-CARBOXYARABINITOL-1,5-DIPHOSPHATECAP
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00016RuBisCO_large

Ribulose bisphosphate carboxylase large chain, catalytic domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 3KDO RCSB PDB: 3KDO PDBe: 3KDO UniProt: O93627

Downloads

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