ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3kryB1 - ECOD Domain | ECOD

ECOD/Domains/e3kryB1

e3kryB1

UID: 000402003

PDB

Range: B:104-267
PDB: 3KRY chain B(all domains)
UniProt: P45452 (all domains)
Gene: MMP13

Molecule: Collagenase 3

3D Structure

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Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Ligands

in contact, ≤ 4 Å

1-(2-methoxyethyl)-N-oxo-4-({4-[4-(trifluoromethoxy)phenoxy]phenyl}sulfonyl)piperidine-4-carboxamide3KR
Calcium ionCA
metal
Zinc ionZN

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 3KRY RCSB PDB: 3KRY PDBe: 3KRY UniProt: P45452

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.