ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3l7uB1 - ECOD Domain | ECOD

ECOD/Domains/e3l7uB1

e3l7uB1

UID: 000404870

PDB

Range: B:1-152
PDB: 3L7U chain B(all domains)
UniProt: P15531 (all domains)
Gene: NME1

Molecule: Nucleoside diphosphate kinase A

3D Structure

Loading viewer...

Related Domains

Browse other domains in NDK →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupNucleoside diphosphate kinases(304.34)

TT-groupNucleoside diphosphate kinases(304.34.1)

FFamilyNDK(304.34.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Nucleoside diphosphate kinase

External Links

ECOD PDB View: 3L7U RCSB PDB: 3L7U PDBe: 3L7U UniProt: P15531

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure