ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3mxdB1 - ECOD Domain | ECOD

ECOD/Domains/e3mxdB1

e3mxdB1

UID: 000404925

PDB

Range: B:1-99
PDB: 3MXD chain B(all domains)
UniProt: P03369 (all domains)
Gene: gag-pol

Molecule: HIV-1 protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

(5S)-N-{(1S,2R)-3-[(1,3-benzodioxol-5-ylsulfonyl)(2-methylpropyl)amino]-1-benzyl-2-hydroxypropyl}-3-(2-hydroxyphenyl)-2-oxo-1,3-oxazolidine-5-carboxamideK53

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 3MXD RCSB PDB: 3MXD PDBe: 3MXD UniProt: P03369

Downloads

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Drug annotations from DrugDomain.