ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3npeA1 - ECOD Domain | ECOD

ECOD/Domains/e3npeA1

e3npeA1

UID: 000405002

PDB

Range: A:83-604
PDB: 3NPE chain A(all domains)
UniProt: O24592 (all domains)
Gene: VP14

Molecule: 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic

3D Structure

Loading viewer...

Related Domains

Browse other domains in RPE65 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-propeller-like(5)

HH-groupbeta-propeller(5.1)

TT-group7-bladed(5.1.4)

FFamilyRPE65(5.1.4.15)

Ligands

in contact, ≤ 4 Å

Hydroxide ionOH
drugDrugBank DB14522
OxygenOXY
drugDrugBank DB09140
FE (II) ION

Pfam Families

Retinal pigment epithelial membrane protein

ClanCL0186Beta_propeller

External Links

ECOD PDB View: 3NPE RCSB PDB: 3NPE PDBe: 3NPE UniProt: O24592

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (1,4-Dioxane)

1,4-DioxaneDIO
DrugBank DB03316

Shown in the structure viewer. Drug annotations from DrugDomain.