ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3o1pA1 - ECOD Domain | ECOD

ECOD/Domains/e3o1pA1

e3o1pA1

UID: 000405686

PDB

Range: A:13-214
PDB: 3O1P chain A(all domains)
UniProt: P05050 (all domains)
Gene: alkB

Molecule: Alpha-ketoglutarate-dependent dioxygenase AlkB

3D Structure

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Related Domains

Browse other domains in 2OG-FeII_Oxy_2 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamily2OG-FeII_Oxy_2(10.12.1.51)

Ligands

in contact, ≤ 4 Å

Oxogluric acidAKG
drugDrugBank DB08845within 5 Å only
MANGANESE (II) IONMN
metalwithin 5 Å only

+ 1 additive (Glycerin)

Pfam Families

PF135322OG-FeII_Oxy_2

2OG-Fe(II) oxygenase superfamily

ClanCL0029Cupin

External Links

ECOD PDB View: 3O1P RCSB PDB: 3O1P PDBe: 3O1P UniProt: P05050

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL
DrugBank DB09462within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.