ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3oyjA3 - ECOD Domain | ECOD

ECOD/Domains/e3oyjA3

e3oyjA3

UID: 000405812

PDB

Range: A:109-312
PDB: 3OYJ chain A(all domains)
UniProt: P14350 (all domains)
Gene: pol

Molecule: PFV integrase

3D Structure

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Related Domains

Browse other domains in rve →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
(6S)-2-(3-chloro-4-fluorobenzyl)-8-ethyl-10-hydroxy-N,6-dimethyl-1,9-dioxo-1,2,6,7,8,9-hexahydropyrazino[1',2':1,5]pyrrolo[2,3-d]pyridazine-4-carboxamideZZX

+ 2 additives (Glycerin, Ammonium ion)

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 3OYJ RCSB PDB: 3OYJ PDBe: 3OYJ UniProt: P14350

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Glycerin

DrugBank DB09462

Ammonium ionNH4

Shown in the structure viewer. Drug annotations from DrugDomain.