ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3pgyC1 - ECOD Domain | ECOD

ECOD/Domains/e3pgyC1

e3pgyC1

UID: 000405894

PDB

Range: C:276-411
PDB: 3PGY chain C(all domains)
UniProt: Q5HE87 (all domains)
Gene: glyA

Molecule: Serine hydroxymethyltransferase

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupC-terminal domain in some PLP-dependent transferases(3016)

HH-groupC-terminal domain in some PLP-dependent transferases(3016.1)

TT-groupC-terminal domain in some PLP-dependent transferases(3016.1.1)

FFamilySHMT(3016.1.1.5)

Ligands

in contact, ≤ 4 Å

GlycineGLY
drugDrugBank DB00145within 5 Å only

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 3PGY RCSB PDB: 3PGY PDBe: 3PGY UniProt: Q5HE87

Downloads

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