ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ykmD1 - ECOD Domain | ECOD

ECOD/Domains/e1ykmD1

e1ykmD1

UID: 000040841

PDB

Range: D:303-538
PDB: 1YKM chain D(all domains)
UniProt: P00437 (all domains)
Gene: pcaH

Molecule: Protocatechuate 3,4-dioxygenase beta chain

3D Structure

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Related Domains

Browse other domains in Dioxygenase_C,PCDO_beta_N →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupPrealbumin-like(11.1.4)

FFamilyDioxygenase_C,PCDO_beta_N(11.1.4.6)

Ligands

in contact, ≤ 4 Å

FE (III) IONFE
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00775Dioxygenase_C

Dioxygenase

ClanCL0287Transthyretin

PF12391PCDO_beta_N

Protocatechuate 3,4-dioxygenase beta subunit N terminal

External Links

ECOD PDB View: 1YKM RCSB PDB: 1YKM PDBe: 1YKM UniProt: P00437

Downloads

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