ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q8XFI3_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q8XFI3_nD1

Q8XFI3_nD1

UID: 004086679

AlphaFold

Range: 1-75
AlphaFold: AF-Q8XFI3
UniProt: Q8XFI3 (all domains)
Gene: rlmM

Protein: Ribosomal RNA large subunit methyltransferase M (EC 2.1.1.186) (23S rRNA (cytidine2498-2'-O)-methyltransferase) (23S rRNA 2'-O-ribose methyltransferase RlmM)

3D Structure

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Related Domains

Browse other domains in RlmM_FDX →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupFerredoxin-like domain in ThiI(304.120)

TT-groupFerredoxin-like domain in ThiI(304.120.1)

FFamilyRlmM_FDX(304.120.1.2)

Pfam Families

PF18125RlmM_FDX

RlmM ferredoxin-like domain

External Links

AlphaFold DB: Q8XFI3 UniProt: Q8XFI3

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-75