ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3p05C1 - ECOD Domain | ECOD

ECOD/Domains/e3p05C1

e3p05C1

UID: 000409850

PDB

Range: C:148-219
PDB: 3P05 chain C(all domains)
UniProt: P12497 (all domains)
Gene: gag-pol

Molecule: HIV-1 CA

3D Structure

Loading viewer...

Related Domains

Browse other domains in Gag_p24_C →

Classification

AArchitecturealpha bundles(a.7)

XX-groupRetrovirus capsid protein(170)

HH-groupRetrovirus capsid protein-C(170.1)

TT-groupRetrovirus capsid protein-C(170.1.1)

FFamilyGag_p24_C(170.1.1.5)

Ligands

in contact, ≤ 4 Å

Iodide ionIOD

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF19317Gag_p24_C

Gag protein p24 C-terminal domain

ClanCL0148Viral_Gag

External Links

ECOD PDB View: 3P05 RCSB PDB: 3P05 PDBe: 3P05 UniProt: P12497

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure