ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3p8bC1 - ECOD Domain | ECOD

ECOD/Domains/e3p8bC1

e3p8bC1

UID: 000411063

PDB

Range: C:2-61
PDB: 3P8B chain C(all domains)
UniProt: Q8U440 (all domains)
Gene: spt4

Molecule: DNA-directed RNA polymerase, subunit e''

3D Structure

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Related Domains

Browse other domains in Spt4 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupRubredoxin-related(375.1.1)

FFamilySpt4(375.1.1.33)

Ligands

in contact, ≤ 4 Å

MercaptoethanolBME
drugDrugBank DB03345within 5 Å only
Zinc ionZN
metal

+ 1 additive (Glycerol)

Pfam Families

Spt4/RpoE2 zinc finger

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 3P8B RCSB PDB: 3P8B PDBe: 3P8B UniProt: Q8U440

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.