ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e2xk1D2 - ECOD Domain | ECOD

ECOD/Domains/e2xk1D2

e2xk1D2

UID: 000411242

PDB

Range: D:45-66,D:285-353
PDB: 2XK1 chain D(all domains)
UniProt: P39045 (all domains)
Gene: dac

Molecule: D-ALANYL-D-ALANINE CARBOXYPEPTIDASE

3D Structure

Loading viewer...

Related Domains

Browse other domains in Peptidase_S13 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019)

HH-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1)

TT-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1.1)

FFamilyPeptidase_S13(4019.1.1.4)

Ligands

in contact, ≤ 4 Å

[(1S)-1-{[(2-benzylphenyl)carbonyl]amino}ethyl](trihydroxy)borate(1-)EWB

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02113Peptidase_S13

D-Ala-D-Ala carboxypeptidase 3 (S13) family

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 2XK1 RCSB PDB: 2XK1 PDBe: 2XK1 UniProt: P39045

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure