ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2xlnD3 - ECOD Domain | ECOD

ECOD/Domains/e2xlnD3

e2xlnD3

UID: 000411259

PDB

Range: D:1-44,D:354-467
PDB: 2XLN chain D(all domains)
UniProt: P39045 (all domains)
Gene: dac

Molecule: D-ALANYL-D-ALANINE CARBOXYPEPTIDASE,

3D Structure

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Related Domains

Browse other domains in Peptidase_S13 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyPeptidase_S13(223.3.1.6)

Ligands

in contact, ≤ 4 Å

[(1S)-1-{[(2,6-DIMETHOXYPHENYL)CARBONYL]AMINO}ETHYL]BORONIC ACIDEWA

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02113Peptidase_S13

D-Ala-D-Ala carboxypeptidase 3 (S13) family

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 2XLN RCSB PDB: 2XLN PDBe: 2XLN UniProt: P39045

Downloads

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