ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3lkjC1 - ECOD Domain | ECOD

ECOD/Domains/e3lkjC1

e3lkjC1

UID: 000411584

PDB

Range: C:121-261
PDB: 3LKJ chain C(all domains)
UniProt: P29965 (all domains)
Gene: CD40LG

Molecule: CD40 ligand

3D Structure

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Related Domains

Browse other domains in TNF →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupTNF-like(10.3)

TT-groupTNF-like(10.3.1)

FFamilyTNF(10.3.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
(2R)-{[(2'-[(biphenyl-3-ylmethyl)carbamoyl]-6'-{[(2R)-2-(pyrrolidin-1-ylmethyl)pyrrolidin-1-yl]carbonyl}-6-{[(2R)-2-(1H-pyrrol-1-ylmethyl)pyrrolidin-1-yl]carbonyl}-4,4'-bipyridin-2-yl)carbonyl]amino}(cyclohexyl)ethanoic acidLKJ

Pfam Families

TNF(Tumour Necrosis Factor) family

ClanCL0100C1q_TNF

External Links

ECOD PDB View: 3LKJ RCSB PDB: 3LKJ PDBe: 3LKJ UniProt: P29965

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.