ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3omiA1 - ECOD Domain | ECOD

ECOD/Domains/e3omiA1

e3omiA1

UID: 000411709

PDB

Range: A:17-551
PDB: 3OMI chain A(all domains)
UniProt: Q3J5A7 (all domains)
Gene: coxI

Molecule: Cytochrome c oxidase, aa3 type, subunit I

3D Structure

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Related Domains

Browse other domains in COX1 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupCytochrome c oxidase subunit I-like(5038)

HH-groupCytochrome c oxidase subunit I-like(5038.1)

TT-groupCytochrome c oxidase subunit I-like(5038.1.1)

FFamilyCOX1(5038.1.1.1)

Ligands

in contact, ≤ 4 Å

Hydroxide ionOH
drugDrugBank DB14522within 5 Å only
Calcium ionCA
metalwithin 5 Å only
Cadmium ion

Pfam Families

Cytochrome C and Quinol oxidase polypeptide I

ClanCL0714COX1-like

External Links

ECOD PDB View: 3OMI RCSB PDB: 3OMI PDBe: 3OMI UniProt: Q3J5A7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metalwithin 5 Å only

Chloride ionCL

within 5 Å only

COPPER (II) IONCU

metalwithin 5 Å only

Decyl-beta-d-maltopyranosideDMU

within 5 Å only

Heme-aHEA

within 5 Å only

Magnesium ionMG

metalwithin 5 Å only

TridecaneTRD

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.