ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3omiD1 - ECOD Domain | ECOD

ECOD/Domains/e3omiD1

e3omiD1

UID: 000411713

PDB

Range: D:30-129
PDB: 3OMI chain D(all domains)
UniProt: Q3J5G0 (all domains)
Gene: coxII

Molecule: Cytochrome c oxidase subunit 2

3D Structure

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Related Domains

Browse other domains in COX2_TM →

Classification

AArchitectureextended segments(a.20)

XX-groupCytochrome c oxidase subunit II-like, transmembrane region(5040)

HH-groupCytochrome c oxidase subunit II-like, transmembrane region(5040.1)

TT-groupCytochrome c oxidase subunit II-like, transmembrane region(5040.1.1)

FFamilyCOX2_TM(5040.1.1.1)

Ligands

in contact, ≤ 4 Å

Cadmium ionCD
metalwithin 5 Å only
Decyl-beta-d-maltopyranosideDMU
within 5 Å only
Heme-aHEA

Pfam Families

PF02790COX2_TM

Cytochrome C oxidase subunit II, transmembrane domain

External Links

ECOD PDB View: 3OMI RCSB PDB: 3OMI PDBe: 3OMI UniProt: Q3J5G0

Downloads

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within 5 Å only

TridecaneTRD

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.