ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3q6jB1 - ECOD Domain | ECOD

ECOD/Domains/e3q6jB1

e3q6jB1

UID: 000413101

PDB

Range: B:384-523
PDB: 3Q6J chain B(all domains)
UniProt: Q56839 (all domains)
Gene: xecC

Molecule: 2-oxopropyl-CoM reductase, carboxylating

3D Structure

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Related Domains

Browse other domains in Pyr_redox_dim →

Classification

AArchitecturea+b two layers(a.11)

XX-groupFAD-linked reductases, C-terminal domain-like(244)

HH-groupFAD/NAD-linked reduatases, dimerisation (C-terminal) domain(244.2)

TT-groupFAD/NAD-linked reduatases, dimerisation (C-terminal) domain(244.2.1)

FFamilyPyr_redox_dim(244.2.1.1)

Ligands

in contact, ≤ 4 Å

Carbon dioxideCO2
drugDrugBank DB09157
Flavin adenine dinucleotideFAD
drugDrugBank DB03147

Pfam Families

PF02852Pyr_redox_dim

Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

ClanCL0608Reductase_C

External Links

ECOD PDB View: 3Q6J RCSB PDB: 3Q6J PDBe: 3Q6J UniProt: Q56839

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

2-oxopropyl-CoM

drugDrugBank DB03163

Nicotinamide adenine dinucleotide phosphateNAP

drugDrugBank DB03461

Magnesium ionMG

metal

+ 1 additive (Bicarbonate ion)

Bicarbonate ionBCT

Shown in the structure viewer. Drug annotations from DrugDomain.